1 citations · 1 across the 3 of their papers we have counts for
3 papers
q-bio.GN2014
Misassembly Detection using Paired-End Sequence Reads and Optical Mapping Data
Martin D. Muggli, Simon J. Puglisi, Roy Ronen +1
A crucial problem in genome assembly is the discovery and correction of misassembly errors in draft genomes. We develop a method that will enhance the quality of draft genomes by i…
cs.DS2014
Variable-Order de Bruijn Graphs
Christina Boucher, Alex Bowe, Travis Gagie +2
The de Bruijn graph of a set of strings is a key data structure in genome assembly that represents overlaps between all the -length substrings of . Construction and…
q-bio.QM2012★ 1 cited
SeeSite: Efficiently Finding Co-occurring Splice Sites and Exon Splicing Enhancers
Christine Lo, Boyko Kakaradov, Daniel Lokshtanov +1
The problem of identifying splice sites consists of two sub-problems: finding their boundaries, and characterizing their sequence markers. Other splicing elements---including, enha…