3 papers
cs.CV2026
Adapting a Pre-trained Single-Cell Foundation Model to Spatial Gene Expression Generation from Histology Images
Donghai Fang, Yongheng Li, Zhen Wang +2
Spatial transcriptomics (ST) enables spot-level in situ expression profiling, but its high cost and limited throughput motivate predicting expression directly from HE-stained histo…
cs.CV2024
Multi-Slice Spatial Transcriptomics Data Integration Analysis with STG3Net
Donghai Fang, Fangfang Zhu, Wenwen Min
With the rapid development of the latest Spatially Resolved Transcriptomics (SRT) technology, which allows for the mapping of gene expression within tissue sections, the integrativ…
q-bio.GN2024
Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data
Donghai Fang, Fangfang Zhu, Dongting Xie +1
With the rapid advancement of Spatial Resolved Transcriptomics (SRT) technology, it is now possible to comprehensively measure gene transcription while preserving the spatial conte…