3 papers
q-bio.BM2026
ZeroFold: Protein-RNA Binding Affinity Predictions from Pre-Structural Embeddings
Josef Hanke, Sebastian Pujalte Ojeda, Shengyu Zhang +3
The accurate prediction of protein-RNA binding affinity remains an unsolved problem in structural biology, limiting opportunities in understanding gene regulation and designing RNA…
cs.LG2025
A Standardized Benchmark for Multilabel Antimicrobial Peptide Classification
Sebastian Ojeda, Rafael Velasquez, Nicolás Aparicio +7
Antimicrobial peptides have emerged as promising molecules to combat antimicrobial resistance. However, fragmented datasets, inconsistent annotations, and the lack of standardized…
cs.LG2025
Multi-state Protein Design with DynamicMPNN
Alex Abrudan, Sebastian Pujalte Ojeda, Chaitanya K. Joshi +6
Structural biology has long been dominated by the one sequence, one structure, one function paradigm, yet many critical biological processes - from enzyme catalysis to membrane tra…