39 citations · 45 across the 2 of their papers we have counts for
3 papers
q-bio.PE2012★ 39 cited
Accurate reconstruction of insertion-deletion histories by statistical phylogenetics
Oscar Westesson, Gerton Lunter, Benedict Paten +1
The Multiple Sequence Alignment (MSA) is a computational abstraction that represents a partial summary either of indel history, or of structural similarity. Taking the former view…
q-bio.QM2012★ 6 cited
Developing and applying heterogeneous phylogenetic models with XRate
Oscar Westesson, Ian Holmes
Modeling sequence evolution on phylogenetic trees is a useful technique in computational biology. Especially powerful are models which take account of the heterogeneous nature of s…
q-bio.PE2011
Phylogenetic automata, pruning, and multiple alignment
Oscar Westesson, Gerton Lunter, Benedict Paten +1
We present an extension of Felsenstein's algorithm to indel models defined on entire sequences, without the need to condition on one multiple alignment. The algorithm makes use of…