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Ching-Huei Tsou

3 papers hereh-index 11367 citations31 works total

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author position
  • first author1
  • middle author2

Across the 3 of 3 papers where every author was matched, so the position is known.

fields
  • q-bio.GN2
  • q-bio.QM1

identity via Semantic Scholar / OpenAlex

most citedBMFM-RNA: whole-cell expression decoding improves transcriptomic foundation models

1 citations · 1 across the 1 of their papers we have counts for

collaborators

3 papers

q-bio.GN2026★ 1 cited

BMFM-RNA: whole-cell expression decoding improves transcriptomic foundation models

Michael M. Danziger, Bharath Dandala, Viatcheslav Gurev +12

Transcriptomic foundation models pretrained with masked language modeling can achieve low pretraining loss yet produce poor cell representations for downstream tasks. We introduce…

q-bio.QM2025

BioVERSE: Representation Alignment of Biomedical Modalities to LLMs for Multi-Modal Reasoning

Ching-Huei Tsou, Michal Ozery-Flato, Ella Barkan +2

Recent advances in large language models (LLMs) and biomedical foundation models (BioFMs) have achieved strong results in biological text reasoning, molecular modeling, and single-…

q-bio.GN2025

BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects

Hongyang Li, Sanjoy Dey, Bum Chul Kwon +7

Large language models (LLMs) trained on text demonstrated remarkable results on natural language processing (NLP) tasks. These models have been adapted to decipher the language of…

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Not affiliated with arXiv. Researcher data from Semantic Scholar (ODC-BY) and OpenAlex.