39 citations · 42 across the 3 of their papers we have counts for
3 papers
cs.DS2013★ 3 cited
AliBI: An Alignment-Based Index for Genomic Datasets
Hector Ferrada, Travis Gagie, Tommi Hirvola +1
With current hardware and software, a standard computer can now hold in RAM an index for approximate pattern matching on about half a dozen human genomes. Sequencing technologies h…
cs.DS2013★ 39 cited
Hybrid Indexes for Repetitive Datasets
H. Ferrada, T. Gagie, T. Hirvola +1
Advances in DNA sequencing mean databases of thousands of human genomes will soon be commonplace. In this paper we introduce a simple technique for reducing the size of conventiona…
cs.OH2012
MIPS code compression
Tommi Hirvola
MIPS machine code is very structured: registers used before are likely to be used again, some instructions and registers are used more heavily than others, some instructions often…