3 papers
cs.AI2026
Inter-Residue Geometry Attention for Antibody-Specific Epitope Prediction
Chuanliu Fan, Nan Yu, Junjie Wu +1
Antibody-specific epitope prediction aims to identify which antigen residues are recognized by a given antibody, a task that depends on the three-dimensional complementarity betwee…
cs.LG2025
ProtTeX-CC: Activating In-Context Learning in Protein LLM via Two-Stage Instruction Compression
Chuanliu Fan, Zicheng Ma, Jun Gao +5
Recent advances in protein large language models, such as ProtTeX, represent both side-chain amino acids and backbone structure as discrete token sequences of residue length. While…
cs.CE2025
ChatMol: A Versatile Molecule Designer Based on the Numerically Enhanced Large Language Model
Chuanliu Fan, Ziqiang Cao, Zicheng Ma +5
Goal-oriented de novo molecule design, namely generating molecules with specific property or substructure constraints, is a crucial yet challenging task in drug discovery. Existing…