3 papers
q-bio.GN2014
MUSIC: A Hybrid Computing Environment for Burrows-Wheeler Alignment for Massive Amount of Short Read Sequence Data
Saurabh Gupta, Sanjoy Chaudhury 'and' Binay Panda
High-throughput DNA sequencers are becoming indispensable in our understanding of diseases at molecular level, in marker-assisted selection in agriculture and in microbial genetics…
q-bio.QM2013
SInC: An accurate and fast error-model based simulator for SNPs, Indels and CNVs coupled with a read generator for short-read sequence data
Swetansu Pattnaik, Saurabh Gupta, Arjun A Rao +1
We report SInC (SNV, Indel and CNV) simulator and read generator, an open-source tool capable of simulating biological variants taking into account a platform-specific error model.…
q-bio.GN2013
Augmenting transcriptome assembly combinatorially
Prachi Jain, Neeraja M. Krishnan, Binay Panda
RNA-seq allows detection and precise quantification of transcripts, provides comprehensive understanding of exon/intron boundaries, aids discovery of alternatively spliced isoforms…