903 citations · 941 across the 4 of their papers we have counts for
5 papers
Comparing Evolutionary Rates Using An Exact Test for 2x2 Tables with Continuous Cell Entries
A. Morgan Thompson, M. Cyrus Maher, Lawrence H. Uricchio +2
Assessing the statistical significance of an observed 2x2 contingency table can easily be accomplished using Fisher's exact test (FET). However, if the cell entries are continuous…
Selscan: an efficient multi-threaded program to perform EHH-based scans for positive selection
Zachary A Szpiech, Ryan D Hernandez
Haplotype-based scans to detect natural selection are useful to identify recent or ongoing positive selection in genomes. As both real and simulated genomic datasets grow larger, s…
A MOSAIC of methods: Improving ortholog detection through integration of algorithmic diversity
M. Cyrus Maher, Ryan D. Hernandez
Ortholog detection (OD) is a critical step for comparative genomic analysis of protein-coding sequences. In this paper, we begin with a comprehensive comparison of four popular, me…
Robust forward simulations of recurrent hitchhiking
Lawrence H. Uricchio, Ryan D. Hernandez
Evolutionary forces shape patterns of genetic diversity within populations and contribute to phenotypic variation. In particular, recurrent positive selection has attracted signifi…
Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data
Ryan N. Gutenkunst, Ryan D. Hernandez, Scott H. Williamson +1
Demographic models built from genetic data play important roles in illuminating prehistorical events and serving as null models in genome scans for selection. We introduce an infer…