2 papers
q-bio.PE2014
Epidemic clones, oceanic gene pools and eco-LD in the free living marine pathogen Vibrio parahaemolyticus
Yujun Cui, Xianwei Yang, Xavier Didelot +12
We investigated global patterns of variation in 157 whole genome sequences of Vibrio parahaemolyticus, a free-living and seafood associated marine bacterium. Pandemic clones, respo…
q-bio.QM2013
A Bayesian approach to inferring the phylogenetic structure of communities from metagenomic data
John O'Brien, Xavier Didelot, Zamin Iqbal +3
Metagenomics provides a powerful new tool set for investigating evolutionary interactions with the environment. However, an absence of model-based statistical methods means that re…