65 citations · 120 across the 5 of their papers we have counts for
5 papers
Conservation and losses of avian non-coding RNA loci
Paul P. Gardner, Mario Fasold, Sarah W. Burge +6
Here we present the results of a large-scale bioinformatic annotation of non-coding RNA loci in 48 avian genomes. Our approach uses probabilistic models of hand-curated families fr…
Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling
Stinus Lindgreen, Sinan Ugur Umu, Alicia Sook-Wei Lai +9
Noncoding RNAs are integral to a wide range of biological processes, including translation, gene regulation, host-pathogen interactions and environmental sensing. While genomics is…
Comparative Analysis of RNA Families Reveals Distinct Repertoires for Each Domain of Life
Marc P. Hoeppner, Paul P. Gardner, Anthony M. Poole
The RNA world hypothesis, that RNA genomes and catalysts preceded DNA genomes and genetically-encoded protein catalysts, has been central to models for the early evolution of life…
An Introduction to RNA Databases
Marc P. Hoeppner, Lars E. Barquist, Paul P. Gardner
We present an introduction to RNA databases. The history and technology behind RNA databases is briefly discussed. We examine differing methods of data collection and curation, and…
Studying RNA homology and conservation with Infernal: from single sequences to RNA families
Lars Barquist, Sarah W. Burge, Paul P. Gardner
Emerging high-throughput technologies have led to a deluge of putative non-coding RNA (ncRNA) sequences identified in a wide variety of organisms. Systematic characterization of th…