109 citations · 278 across the 4 of their papers we have counts for
4 papers
Revised Annotations, Sex-Biased Expression, and Lineage-Specific Genes in the Drosophila melanogaster group
Rebekah L. Rogers, Ling Shao, Jaleal S. Sanjak +2
Here, we provide revised gene models for D. ananassae, D. yakuba, and D. simulans, which include UTRs and empirically verified intron-exon boundaries, as well as ortholog groups id…
Tandem duplications and the limits of natural selection in Drosophila yakuba and Drosophila simulans
Rebekah L Rogers, Julie M Cridland, Ling Shao +3
Tandem duplications are an essential source of genetic novelty, and their variation in natural populations is expected to influence adaptive walks. Here, we describe evolutionary i…
Landscape of standing variation for tandem duplications in Drosophila yakuba and Drosophila simulans
Rebekah L. Rogers, Julie M. Cridland, Ling Shao +3
We have used whole genome paired-end Illumina sequence data to identify tandem duplications in 20 isofemale lines of D. yakuba, and 20 isofemale lines of D. simulans and performed…
A C++ template library for efficient forward-time population genetic simulation of large populations
Kevin R. Thornton
fwdpp is a C++ library of routines intended to facilitate the development of forward-time simulations under arbitrary mutation and fitness models. The library design provides a com…