activity
20142024
most citedStructure-Informed Protein Language Model

9 citations · 17 across the 5 of their papers we have counts for

collaborators

5 papers

cs.LG2024

Learning Granger Causality from Instance-wise Self-attentive Hawkes Processes

Dongxia Wu, Tsuyoshi Idé, Aurélie Lozano +5

We address the problem of learning Granger causality from asynchronous, interdependent, multi-type event sequences. In particular, we are interested in discovering instance-level c…

q-bio.BM20241 cited

ProtIR: Iterative Refinement between Retrievers and Predictors for Protein Function Annotation

Zuobai Zhang, Jiarui Lu, Vijil Chenthamarakshan +3

Protein function annotation is an important yet challenging task in biology. Recent deep learning advancements show significant potential for accurate function prediction by learni…

q-bio.BM20249 cited

Structure-Informed Protein Language Model

Zuobai Zhang, Jiarui Lu, Vijil Chenthamarakshan +3

Protein language models are a powerful tool for learning protein representations through pre-training on vast protein sequence datasets. However, traditional protein language model…

math.OC20167 cited

Generalized Kalman Smoothing: Modeling and Algorithms

A. Y. Aravkin, J. V. Burke, L. Ljung +2

State-space smoothing has found many applications in science and engineering. Under linear and Gaussian assumptions, smoothed estimates can be obtained using efficient recursions,…

cs.LG2014

Scalable Matrix-valued Kernel Learning for High-dimensional Nonlinear Multivariate Regression and Granger Causality

Vikas Sindhwani, Ha Quang Minh, Aurelie Lozano

We propose a general matrix-valued multiple kernel learning framework for high-dimensional nonlinear multivariate regression problems. This framework allows a broad class of mixed…