8 citations · 16 across the 5 of their papers we have counts for
5 papers
A Structured Hardware Software Architecture for Peptide Based Diagnosis - Sub-string Matching Problem with Limited Tolerance (ICIAfS14)
S. M. Vidanagamachchi, S. D. Dewasurendra, R. G. Ragel +1
The problem of inferring proteins from complex peptide samples in shotgun proteomic workflow sets extreme demands on computational resources. This is exacerbated by the fact that,…
A Structured Hardware Software Architecture for Peptide Based Diagnosis of Baylisascaris Procyonis Infection (ICIAfS14)
S. M. Vidanagamachchi, S. D. Dewasurendra, R. G. Ragel +1
The problem of inferring proteins from complex peptide cocktails (digestion products of biological samples) in shotgun proteomic workflow sets extreme demands on computational reso…
Tile optimization for area in FPGA based hardware acceleration of peptide identification
S. M. Vidanagamachchi, S. D. Dewasurendra, R. G. Ragel +1
Advances in life sciences over the last few decades have lead to the generation of a huge amount of biological data. Computing research has become a vital part in driving biologica…
Hardware accelerated protein inference framework
S. M. Vidanagamachchi, S. D. Dewasurendra, R. G. Ragel
Protein inference plays a vital role in the proteomics study. Two major approaches could be used to handle the problem of protein inference; top-down and bottom-up. This paper pres…
Hardware software co-design of the Aho-Corasick algorithm: Scalable for protein identification?
S. M. Vidanagamachchi, S. D. Dewasurendra, R. G. Ragel
Pattern matching is commonly required in many application areas and bioinformatics is a major area of interest that requires both exact and approximate pattern matching. Much work…