2 papers
q-bio.PE2020
Online Bayesian phylodynamic inference in BEAST with application to epidemic reconstruction
Mandev S. Gill, Philippe Lemey, Marc A. Suchard +2
Reconstructing pathogen dynamics from genetic data as they become available during an outbreak or epidemic represents an important statistical scenario in which observations arrive…
stat.ME2014
Synonymous and Nonsynonymous Distances Help Untangle Convergent Evolution and Recombination
Peter B. Chi, Sujay Chattopadhyay, Philippe Lemey +2
When estimating a phylogeny from a multiple sequence alignment, researchers often assume the absence of recombination. However, if recombination is present, then tree estimation an…