2 papers
cs.GR2026
ARCOL: Aspect Ratio Constrained Orthogonal Layout
Zainab Alsuwaykit, Yousef Rajeh, Alexandre Kouyoumdjian +5
Orthogonal graph layout algorithms aim to produce clear, compact, and readable network diagrams by arranging nodes and edges along horizontal and vertical lines, while minimizing b…
q-bio.QM2025
DiffFit: Visually-Guided Differentiable Fitting of Molecule Structures to a Cryo-EM Map
Deng Luo, Zainab Alsuwaykit, Dawar Khan +3
We introduce DiffFit, a differentiable algorithm for fitting protein atomistic structures into an experimental reconstructed Cryo-Electron Microscopy (cryo-EM) volume map. In struc…