76 citations · 125 across the 3 of their papers we have counts for
5 papers
Two-Locus Likelihoods under Variable Population Size and Fine-Scale Recombination Rate Estimation
John A. Kamm, Jeffrey P. Spence, Jeffrey Chan +1
Two-locus sampling probabilities have played a central role in devising an efficient composite likelihood method for estimating fine-scale recombination rates. Due to mathematical…
The site frequency spectrum for general coalescents
Jeffrey P. Spence, John A. Kamm, Yun S. Song
General genealogical processes such as - and -coalescents, which respectively model multiple and simultaneous mergers, have important applications in studying marine species,…
Efficient computation of the joint sample frequency spectra for multiple populations
John A. Kamm, Jonathan Terhorst, Yun S. Song
A wide range of studies in population genetics have employed the sample frequency spectrum (SFS), a summary statistic which describes the distribution of mutant alleles at a polymo…
Decoding coalescent hidden Markov models in linear time
Kelley Harris, Sara Sheehan, John A. Kamm +1
In many areas of computational biology, hidden Markov models (HMMs) have been used to model local genomic features. In particular, coalescent HMMs have been used to infer ancient p…
Approximate sampling formulae for general finite-alleles models of mutation
Anand Bhaskar, John A. Kamm, Yun S. Song
Many applications in genetic analyses utilize sampling distributions, which describe the probability of observing a sample of DNA sequences randomly drawn from a population. In the…