2 papers
q-bio.BM2016
Size-Independent Quantification of Ligand Binding Site Depth in Receptor Proteins
Srujana Cheguri, Vicente M. Reyes
We have developed a web server that implements two complementary methods to quantify the depth of ligand binding site (LBS) in protein-ligand complexes: the "secant plane" (SP) and…
q-bio.BM2016
Representing Rod-Shaped Protein 3D Structures in Cylindrical Coordinates
Srujana Cheguri, Vicente M. Reyes
Based on overall 3D structure, proteins may be grouped into two broad categories, namely, globular proteins (spheroproteins), and elongated or rod-shaped proteins (RSP). The former…