4 papers
Optimizing Interventions for Agent-Based Infectious Disease Simulations
Anja Wolpers, Johannes Ponge, Adelinde M. Uhrmacher
Non-pharmaceutical interventions (NPIs) are commonly used tools for controlling infectious disease transmission when pharmaceutical options are unavailable. Yet, identifying effect…
Using (Not-so) Large Language Models to Generate Simulation Models in a Formal DSL: A Study on Reaction Networks
Justin N. Kreikemeyer, MiÅosz Jankowski, Pia Wilsdorf +1
Formal languages are an integral part of modeling and simulation. They allow the distillation of knowledge into concise simulation models amenable to automatic execution, interpret…
Visual Analysis of Time-Dependent Observables in Cell Signaling Simulations
Lena Cibulski, Fiete Haack, Adelinde Uhrmacher +1
The ability of a cell to communicate with its environment is essential for key cellular functions like replication, metabolism, or cell fate decisions. The involved molecular mecha…
Learning surrogate equations for the analysis of an agent-based cancer model
Kevin Burrage, Pamela M. Burrage, Justin N. Kreikemeyer +2
In this paper, we adapt a two-species agent-based cancer model that describes the interaction between cancer cells and healthy cells on a uniform grid to include the interaction wi…