2 papers
cs.CL2016
Measuring the State of the Art of Automated Pathway Curation Using Graph Algorithms - A Case Study of the mTOR Pathway
Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh
This paper evaluates the difference between human pathway curation and current NLP systems. We propose graph analysis methods for quantifying the gap between human curated pathway…
cs.CL2016
Extracting Biological Pathway Models From NLP Event Representations
Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh
This paper describes an an open-source software system for the automatic conversion of NLP event representations to system biology structured data interchange formats such as SBML…