14 citations · 14 across the 3 of their papers we have counts for
3 papers
q-bio.QM2016
EMDUnifrac: Exact Linear Time Computation of the Unifrac Metric and Identification of Differentially Abundant Organisms
Jason McClelland, David Koslicki
Both the weighted and unweighted Unifrac distances have been very successfully employed to assess if two communities differ, but do not give any information about how two communiti…
q-bio.GN2014★ 14 cited
SEK: Sparsity exploiting -mer-based estimation of bacterial community composition
Saikat Chatterjee, David Koslicki, Siyuan Dong +8
Motivation: Estimation of bacterial community composition from a high-throughput sequenced sample is an important task in metagenomics applications. Since the sample sequence data…
math.DS2011
Coding Sequence Density Estimation Via Topological Pressure
David Koslicki, Daniel J. Thompson
We give a new approach to coding sequence (CDS) density estimation in genomic analysis based on the topological pressure, which we develop from a well known concept in ergodic theo…