30 citations · 75 across the 8 of their papers we have counts for
4 papers · 1 filter
Cytomegalovirus Antigenic Mimicry of Human Alloreactive Peptides: A Potential Trigger for Graft versus Host Disease
Charles Hall, Vishal Koparde, Max Jameson-Lee +9
The association between human cytomegalovirus (hCMV) reactivation and the development of graft-versus-host-disease (GVHD) has been observed in stem cell transplantation (SCT). Seve…
MEEPTOOLS: A maximum expected error based FASTQ read filtering and trimming toolkit
Vishal N. Koparde, Hardik I. Parikh, Steven P. Bradley +1
Next generation sequencing technology rapidly produces massive volume of data and quality control of this sequencing data is essential to any genomic analysis. Here we present MEEP…
MeFiT: Merging and Filtering Tool for Illumina Paired-End Reads for 16S rRNA Amplicon Sequencing
Hardik I. Parikh, Vishal N. Koparde, Steven P. Bradley +2
Recent advances in next-generation sequencing have revolutionized genomic research. 16S rRNA amplicon sequencing using paired-end sequencing on the MiSeq platform from Illumina, In…
Whole Exome Sequencing to Estimate Alloreactivity Potential Between Donors and Recipients in Stem Cell Transplantation
Juliana K. Sampson, Nihar U. Sheth, Vishal N. Koparde +10
Whole exome sequencing was performed on HLA-matched stem cell donors and transplant recipients to measure sequence variation contributing to minor histocompatibility antigen differ…