2 papers
cs.DS2016
Sorting Data on Ultra-Large Scale with RADULS. New Incarnation of Radix Sort
Marek Kokot, Sebastian Deorowicz, Agnieszka Debudaj-Grabysz
The paper introduces RADULS, a new parallel sorter based on radix sort algorithm, intended to organize ultra-large data sets efficiently. For example 4G 16-byte records can be sort…
q-bio.GN2016
Aligning 415 519 proteins in less than two hours on PC
Sebastin Deorowicz, Agnieszka Debudaj-Grabysz, Adam Gudys
Rapid development of modern sequencing platforms enabled an unprecedented growth of protein families databases. The abundance of sets composed of hundreds of thousands sequences is…