11 citations · 22 across the 4 of their papers we have counts for
4 papers
A Linear Algebra Approach to Fast DNA Mixture Analysis Using GPUs
Siddharth Samsi, Brian Helfer, Jeremy Kepner +2
Analysis of DNA samples is an important step in forensics, and the speed of analysis can impact investigations. Comparison of DNA sequences is based on the analysis of short tandem…
Using a Big Data Database to Identify Pathogens in Protein Data Space
Ashley Mae Conard, Stephanie Dodson, Jeremy Kepner +1
Current metagenomic analysis algorithms require significant computing resources, can report excessive false positives (type I errors), may miss organisms (type II errors / false ne…
Rapid Sequence Identification of Potential Pathogens Using Techniques from Sparse Linear Algebra
Stephanie Dodson, Darrell O. Ricke, Jeremy Kepner +2
The decreasing costs and increasing speed and accuracy of DNA sample collection, preparation, and sequencing has rapidly produced an enormous volume of genetic data. However, fast…
Genetic Sequence Matching Using D4M Big Data Approaches
Stephanie Dodson, Darrell O. Ricke, Jeremy Kepner
Recent technological advances in Next Generation Sequencing tools have led to increasing speeds of DNA sample collection, preparation, and sequencing. One instrument can produce ov…