4 papers
ToxReason: A Benchmark for Mechanistic Chemical Toxicity Reasoning via Adverse Outcome Pathway
Jueon Park, Wonjune Jang, Chanhwi Kim +2
Recent advances in large language models (LLMs) have enabled molecular reasoning for property prediction. However, toxicity arises from complex biological mechanisms beyond chemica…
Aspect-Oriented Summarization for Psychiatric Short-Term Readmission Prediction
WonJin Yoon, Boyu Ren, Spencer Thomas +4
Recent progress in large language models (LLMs) has enabled the automated processing of lengthy documents even without supervised training on a task-specific dataset. Yet, their ze…
Learning from Negative Samples in Biomedical Generative Entity Linking
Chanhwi Kim, Hyunjae Kim, Sihyeon Park +3
Generative models have become widely used in biomedical entity linking (BioEL) due to their excellent performance and efficient memory usage. However, these models are usually trai…
KU AIGEN ICL EDI@BC8 Track 3: Advancing Phenotype Named Entity Recognition and Normalization for Dysmorphology Physical Examination Reports
Hajung Kim, Chanhwi Kim, Jiwoong Sohn +8
The objective of BioCreative8 Track 3 is to extract phenotypic key medical findings embedded within EHR texts and subsequently normalize these findings to their Human Phenotype Ont…