9 citations · 9 across the 1 of their papers we have counts for
3 papers
cond-mat.soft2021★ 9 cited
Two-Phase Dynamics of DNA Supercoiling based on DNA Polymer Physics
Biao Wan, Jin Yu
DNA supercoils are generated in genome regulation processes such as transcription and replication, and provide mechanical feedback to such processes. Under tension, DNA supercoil c…
cond-mat.soft2015
Jarzynski matrix equality: calculating free energy difference by non-equilibrium simulations with an arbitrary initial distribution
Biao Wan, Cheng Yang, Yanting Wang +1
The Jarzynski equality (JE), which relates works of non-equilibrium trajectories to the free energy difference of the initial and final states of the non-equilibrium process, provi…
cond-mat.soft2015
Equilibrium sampling by re-weighting non-equilibrium simulation trajectories
Cheng Yang, Biao Wan, Shun Xu +2
With the traditional equilibrium molecular simulations, it is usually difficult to efficiently visit the whole conformational space in complex systems, which are separated into som…