2 papers
q-bio.GN2022
Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches
Paola Bonizzoni, Matteo Costantini, Clelia De Felice +7
Feature embedding methods have been proposed in literature to represent sequences as numeric vectors to be used in some bioinformatics investigations, such as family classification…
cs.DS2017
Computing the BWT and LCP array of a Set of Strings in External Memory
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola +2
Indexing very large collections of strings, such as those produced by the widespread next generation sequencing technologies, heavily relies on multistring generalization of the Bu…