194 citations · 678 across the 20 of their papers we have counts for
3 papers · 1 filter
Automated, predictive, and interpretable inference of C. elegans escape dynamics
Bryan C. Daniels, William S. Ryu, Ilya Nemenman
The roundworm C. elegans exhibits robust escape behavior in response to rapidly rising temperature. The behavior lasts for a few seconds, shows history dependence, involves both se…
Logic and connectivity jointly determine criticality in biological gene regulatory networks
Bryan C. Daniels, Hyunju Kim, Douglas Moore +5
The complex dynamics of gene expression in living cells can be well-approximated using Boolean networks. The average sensitivity is a natural measure of stability in these systems:…
Convenient Interface to Inverse Ising (ConIII): A Python 3 Package for Solving Ising-Type Maximum Entropy Models
Edward D. Lee, Bryan C Daniels
ConIII (pronounced CON-ee) is an open-source Python project providing a simple interface to solving the pairwise and higher order Ising model and a base for extension to other maxi…