2 citations · 3 across the 3 of their papers we have counts for
4 papers
Rate Equations for Graphs
Vincent Danos, Tobias Heindel, Ricardo Honorato-Zimmer +1
In this paper, we combine ideas from two different scientific traditions: 1) graph transformation systems (GTSs) stemming from the theory of formal languages and concurrency, and 2…
Annotations for Rule-Based Models
Matteo Cavaliere, Vincent Danos, Ricardo Honorato-Zimmer +1
The chapter reviews the syntax to store machine-readable annotations and describes the mapping between rule-based modelling entities (e.g., agents and rules) and these annotations.…
Thermodynamic graph-rewriting
Vincent Danos, Russell Harmer, Ricardo Honorato-Zimmer
We develop a new thermodynamic approach to stochastic graph-rewriting. The ingredients are a finite set of reversible graph-rewriting rules called generating rules, a finite set of…
Conan: a platform for complex network analysis
Ricardo Honorato-Zimmer, Bryan Reynaert, Ignacio Vergara +1
Conan is a C++ library created for the accurate and efficient modelling, inference and analysis of complex networks. It implements the generation and modification of graphs accordi…