2 citations · 2 across the 3 of their papers we have counts for
5 papers
BioSimulators: a central registry of simulation engines and services for recommending specific tools
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu +68
Computational models have great potential to accelerate bioscience, bioengineering, and medicine. However, it remains challenging to reproduce and reuse simulations, in part, becau…
ObjTables: structured spreadsheets that promote data quality, reuse, and integration
Jonathan R. Karr, Wolfram Liebermeister, Arthur P. Goldberg +2
A central challenge in science is to understand how systems behaviors emerge from complex networks. This often requires aggregating, reusing, and integrating heterogeneous informat…
Automated generation of bacterial resource allocation models
Ana Bulović, Stephan Fischer, Marc Dinh +7
Resource Balance Analysis (RBA) is a computational method based on resource allocation, which performs accurate quantitative predictions of whole-cell states (i.e. growth rate, met…
The enzyme cost of given metabolic flux distributions, as a function of logarithmic metabolite levels, is convex
Wolfram Liebermeister, Elad Noor
Enzyme costs play a major role in the choice of metabolic routes, both in evolution and bioengineering. Given desired fluxes, necessary enzyme levels can be estimated based on know…
semanticSBML 2.0 - A Collection of Online Services for SBML Models
Falko Krause, Marvin Schulz, Timo Lubitz +1
semanticSBML 2.0 is an online collection of services for the work with biochemical network models in SBML format.