94 citations · 459 across the 72 of their papers we have counts for
80 papers
An adaptive time-tree transition kernel for Bayesian phylogenetic inference
Marius Brusselmans, Guy Baele, Samuel L. Hong +4
Bayesian phylogenetic and phylodynamic analyses can be very time-consuming, owing to the combination of complex models that are used to estimate key parameters from increasingly la…
Stable Matrix Parametrizations and Structured Adjoints for Ornstein-Uhlenbeck Processes
Filippo Monti, Andrew Holbrook, Nathan E. Glatt-Holtz +1
Ornstein-Uhlenbeck processes with flexible multivariate drift matrices are powerful models for capturing coupled, asymmetric, and damped-oscillatory mean reversion. However, likeli…
BEAGLE 4.1: A high-performance library for computation on phylogenetic trees across diverse parallel architectures
Karthik Gangavarapu, Xiang Ji, Yucai Shao +4
Efficient evaluation of sequence data likelihoods and their high-dimensional gradients on phylogenetic trees improves inference under both maximum-likelihood and Bayesian framework…
Smoothly Time-Varying Continuous Time Markov Chains in Phylogenetics
Pratyusa Datta, Philippe Lemey, Marc A. Suchard
The dependence of evolutionary rate estimates on the timeframe of sampling poses a fundamental challenge for reconstructing evolutionary histories from molecular sequence data, whi…
Non-Linear Drivers of Population Dynamics: a Nonparametric Coalescent Approach
Filippo Monti, Nuno R. Faria, Xiang Ji +3
Effective population size (Ne(t)) is a fundamental parameter in population genetics and phylodynamics that quantifies genetic diversity and reveals demographic history. Coalescent-…
PDA in Action: Ten Principles for High-Quality Multi-Site Clinical Evidence Generation
Yong Chen, Jiayi Tong, Yiwen Lu +13
Background: Distributed Research Networks (DRNs) offer significant opportunities for collaborative multi-site research and have significantly advanced healthcare research based on…