436 citations · 565 across the 5 of their papers we have counts for
5 papers
A sequence-to-sequence approach for document-level relation extraction
John Giorgi, Gary D. Bader, Bo Wang
Motivated by the fact that many relations cross the sentence boundary, there has been increasing interest in document-level relation extraction (DocRE). DocRE requires integrating…
DeCLUTR: Deep Contrastive Learning for Unsupervised Textual Representations
John Giorgi, Osvald Nitski, Bo Wang +1
Sentence embeddings are an important component of many natural language processing (NLP) systems. Like word embeddings, sentence embeddings are typically learned on large text corp…
End-to-end Named Entity Recognition and Relation Extraction using Pre-trained Language Models
John Giorgi, Xindi Wang, Nicola Sahar +3
Named entity recognition (NER) and relation extraction (RE) are two important tasks in information extraction and retrieval (IE \& IR). Recent work has demonstrated that it is bene…
SIREN Cytoscape plugin: Interaction Type Discrimination in Gene Regulatory Networks
Jason Montojo, Pegah Khosravi, Vahid H. Gazestani +1
Integrating expression data with gene interactions in a network is essential for understanding the functional organization of the cells. Consequently, knowledge of interaction type…
The human genome and drug discovery after a decade. Roads (still) not taken
Ruth Isserlin, Gary D. Bader, Aled Edwards +3
The draft sequence of the human genome became available almost a decade ago but the encoded proteome is not being explored to its fullest. Our bibliometric analysis of several larg…