3 papers
stat.CO2026
metasnf: Meta Clustering with Similarity Network Fusion in R
Prashanth S Velayudhan, Xiaoqiao Xu, Prajkta Kallurkar +13
metasnf is an R package that enables users to apply meta clustering, a method for efficiently searching a broad space of cluster solutions by clustering the solutions themselves, t…
cs.LG2025
BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model
Adibvafa Fallahpour, Andrew Magnuson, Purav Gupta +8
Unlocking deep and interpretable biological reasoning from complex genomic data remains a major AI challenge limiting scientific progress. While current DNA foundation models excel…
cs.LG2025
Ctrl-DNA: Controllable Cell-Type-Specific Regulatory DNA Design via Constrained RL
Xingyu Chen, Shihao Ma, Runsheng Lin +2
Designing regulatory DNA sequences that achieve precise cell-type-specific gene expression is crucial for advancements in synthetic biology, gene therapy and precision medicine. Al…