130 citations · 317 across the 27 of their papers we have counts for
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q-bio.QM2019★ 1 cited
Exact inference under the perfect phylogeny model
Surjyendu Ray, Bei Jia, Sam Safavi +4
Motivation: Many inference tools use the Perfect Phylogeny Model (PPM) to learn trees from noisy variant allele frequency (VAF) data. Learning in this setting is hard, and existing…
q-bio.QM2018★ 2 cited
Estimating Cellular Goals from High-Dimensional Biological Data
Laurence Yang, Michael A. Saunders, Jean-Christophe Lachance +2
Optimization-based models have been used to predict cellular behavior for over 25 years. The constraints in these models are derived from genome annotations, measured macro-molecul…