473 citations · 911 across the 17 of their papers we have counts for
4 papers · 1 filter
SentRNA: Improving computational RNA design by incorporating a prior of human design strategies
Jade Shi, Rhiju Das, Vijay S. Pande
Solving the RNA inverse folding problem is a critical prerequisite to RNA design, an emerging field in bioengineering with a broad range of applications from reaction catalysis to…
Serverification of Molecular Modeling Applications: the Rosetta Online Server that Includes Everyone (ROSIE)
Sergey Lyskov, Fang-Chieh Chou, Shane Ó Conchúir +14
The Rosetta molecular modeling software package provides experimentally tested and rapidly evolving tools for the 3D structure prediction and high-resolution design of proteins, nu…
Two-dimensional chemical mapping for non-coding RNAs
Wipapat Kladwang, Christopher C. VanLang, Pablo Cordero +1
Non-coding RNA molecules fold into precise base pairing patterns to carry out critical roles in genetic regulation and protein synthesis. We show here that coupling systematic muta…
Understanding the errors of SHAPE-directed RNA structure modeling
Wipapat Kladwang, Christopher C. VanLang, Pablo Cordero +1
Single-nucleotide-resolution chemical mapping for structured RNA is being rapidly advanced by new chemistries, faster readouts, and coupling to computational algorithms. Recent tes…