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4 papers
MIOFlow 2.0: A unified framework for inferring cellular stochastic dynamics from single cell and spatial transcriptomics data
Xingzhi Sun, João Felipe Rocha, Brett Phelan +11
Understanding cellular trajectories via time-resolved single-cell transcriptomics is vital for studying development, regeneration, and disease. A key challenge is inferring continu…
SlepNet: Spectral Subgraph Representation Learning for Neural Dynamics
Siddharth Viswanath, Rahul Singh, Yanlei Zhang +3
Graph neural networks have been useful in machine learning on graph-structured data, particularly for node classification and some types of graph classification tasks. However, the…
Principal Curvatures Estimation with Applications to Single Cell Data
Yanlei Zhang, Lydia Mezrag, Xingzhi Sun +6
The rapidly growing field of single-cell transcriptomic sequencing (scRNAseq) presents challenges for data analysis due to its massive datasets. A common method in manifold learnin…
Exploring the Manifold of Neural Networks Using Diffusion Geometry
Elliott Abel, Andrew J. Steindl, Selma Mazioud +12
Drawing motivation from the manifold hypothesis, which posits that most high-dimensional data lies on or near low-dimensional manifolds, we apply manifold learning to the space of…