7 citations · 15 across the 4 of their papers we have counts for
4 papers
MetaCompass: Reference-guided Assembly of Metagenomes
Tu Luan, Victoria Cepeda, Bo Liu +8
Metagenomic studies have primarily relied on de novo assembly for reconstructing genes and genomes from microbial mixtures. While reference-guided approaches have been employed in…
Robust Parameter Estimation for Biological Systems: A Study on the Dynamics of Microbial Communities
Matthias Chung, Justin Krueger, Mihai Pop
Interest in the study of in-host microbial communities has increased in recent years due to our improved understanding of the communities' significant role in host health. As a res…
SparseAssembler2: Sparse k-mer Graph for Memory Efficient Genome Assembly
Chengxi Ye, Charles H. Cannon, Zhanshan Sam Ma +2
The formal version of our work has been published in BMC Bioinformatics and can be found here: http://www.biomedcentral.com/1471-2105/13/S6/S1 Motivation: To tackle the problem of…
SparseAssembler: de novo Assembly with the Sparse de Bruijn Graph
Chengxi Ye, Zhanshan Sam Ma, Charles H. Cannon +2
de Bruijn graph-based algorithms are one of the two most widely used approaches for de novo genome assembly. A major limitation of this approach is the large computational memory s…