7 citations · 10 across the 4 of their papers we have counts for
4 papers
Inference of Markovian Properties of Molecular Sequences from NGS Data and Applications to Comparative Genomics
Jie Ren, Kai Song, Minghua Deng +3
Next Generation Sequencing (NGS) technologies generate large amounts of short read data for many different organisms. The fact that NGS reads are generally short makes it challengi…
Fuzzy Mating Behavior Enhances Species Coexistence and Delays Extinction in Diverse Communities
Charles Cannon, Manuel Lerdau
Current theories about mechanisms promoting species co-existence in diverse communities assume that species only interact ecologically. Species are treated as discrete evolutionary…
SparseAssembler2: Sparse k-mer Graph for Memory Efficient Genome Assembly
Chengxi Ye, Charles H. Cannon, Zhanshan Sam Ma +2
The formal version of our work has been published in BMC Bioinformatics and can be found here: http://www.biomedcentral.com/1471-2105/13/S6/S1 Motivation: To tackle the problem of…
SparseAssembler: de novo Assembly with the Sparse de Bruijn Graph
Chengxi Ye, Zhanshan Sam Ma, Charles H. Cannon +2
de Bruijn graph-based algorithms are one of the two most widely used approaches for de novo genome assembly. A major limitation of this approach is the large computational memory s…