358 citations · 450 across the 10 of their papers we have counts for
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cs.DS2011★ 3 cited
SparseAssembler2: Sparse k-mer Graph for Memory Efficient Genome Assembly
Chengxi Ye, Charles H. Cannon, Zhanshan Sam Ma +2
The formal version of our work has been published in BMC Bioinformatics and can be found here: http://www.biomedcentral.com/1471-2105/13/S6/S1 Motivation: To tackle the problem of…
cs.DS2011★ 7 cited
SparseAssembler: de novo Assembly with the Sparse de Bruijn Graph
Chengxi Ye, Zhanshan Sam Ma, Charles H. Cannon +2
de Bruijn graph-based algorithms are one of the two most widely used approaches for de novo genome assembly. A major limitation of this approach is the large computational memory s…