29 citations · 67 across the 15 of their papers we have counts for
3 papers · 1 filter
Counting, generating and sampling tree alignments
Cedric Chauve, Julien Courtiel, Yann Ponty
Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is a…
Assessing the robustness of parsimonious predictions for gene neighborhoods from reconciled phylogenies
Ashok Rajaraman, Cedric Chauve, Yann Ponty
The availability of a large number of assembled genomes opens the way to study the evolution of syntenic character within a phylogenetic context. The DeCo algorithm, recently intro…
Combinatorial RNA Design: Designability and Structure-Approximating Algorithm
Jozef Haleš, Ján Maňuch, Yann Ponty +1
In this work, we consider the Combinatorial RNA Design problem, a minimal instance of the RNA design problem which aims at finding a sequence that admits a given target as its uniq…