3 papers
q-bio.BM2026
PUFFIN: Protein Unit Discovery with Functional Supervision
Gökçe UludoÄan, Buse Giledereli, Elif Ozkirimli +1
Proteins carry out biological functions through the coordinated action of groups of residues organized into structural arrangements. These arrangements, which we refer to as protei…
q-bio.BM2026
STAR-GO: Improving Protein Function Prediction by Learning to Hierarchically Integrate Ontology-Informed Semantic Embeddings
Mehmet Efe Akça, Gökçe UludoÄan, Arzucan Ãzgür +1
Accurate prediction of protein function is essential for elucidating molecular mechanisms and advancing biological and therapeutic discovery. Yet experimental annotation lags far b…
cs.CL2025
Cancer Vaccine Adjuvant Name Recognition from Biomedical Literature using Large Language Models
Hasin Rehana, Jie Zheng, Leo Yeh +7
Motivation: An adjuvant is a chemical incorporated into vaccines that enhances their efficacy by improving the immune response. Identifying adjuvant names from cancer vaccine studi…