308 citations · 698 across the 14 of their papers we have counts for
3 papers · 1 filter
KMC 2: Fast and resource-frugal -mer counting
Sebastian Deorowicz, Marek Kokot, Szymon Grabowski +1
Motivation: Building the histogram of occurrences of every -symbol long substring of nucleotide data is a standard step in many bioinformatics applications, known under the name…
Disk-based genome sequencing data compression
Szymon Grabowski, Sebastian Deorowicz, Łukasz Roguski
Motivation: High-coverage sequencing data have significant, yet hard to exploit, redundancy. Most FASTQ compressors cannot efficiently compress the DNA stream of large datasets, si…
Indexing large genome collections on a PC
Agnieszka Danek, Sebastian Deorowicz, Szymon Grabowski
Motivation: The availability of thousands of invidual genomes of one species should boost rapid progress in personalized medicine or understanding of the interaction between genoty…