2 papers
cs.CE2013
Uniform generation of RNA pseudoknot structures with genus filtration
Fenix W. D. Huang, Markus E. Nebel, Christian M. Reidys
In this paper we present a sampling framework for RNA structures of fixed topological genus. We introduce a novel, linear time, uniform sampling algorithm for RNA structures of fix…
math.CO2011
The Expected Order of Saturated RNA Secondary Structures
Emma Yu Jin, Markus E. Nebel
We show the expected order of RNA saturated secondary structures of size is , if we select the saturated secondary structure uniformly at rando…