104 citations · 482 across the 13 of their papers we have counts for
4 papers · 1 filter
Stochastic Simulation of Biomolecular Networks in Dynamic Environments
Margaritis Voliotis, Philipp Thomas, Ramon Grima +1
Simulation of biomolecular networks is now indispensable for studying biological systems, from small reaction networks to large ensembles of cells. Here we present a novel approach…
Distribution approximations for the chemical master equation: comparison of the method of moments and the system size expansion
Alexander Andreychenko, Luca Bortolussi, Ramon Grima +2
The stochastic nature of chemical reactions involving randomly fluctuating population sizes has lead to a growing research interest in discrete-state stochastic models and their an…
Computation of biochemical pathway fluctuations beyond the linear noise approximation using iNA
Philipp Thomas, Hannes Matuschek, Ramon Grima
The linear noise approximation is commonly used to obtain intrinsic noise statistics for biochemical networks. These estimates are accurate for networks with large numbers of molec…
How accurate are the non-linear chemical Fokker-Planck and chemical Langevin equations?
Ramon Grima, Philipp Thomas, Arthur V. Straube
The chemical Fokker-Planck equation and the corresponding chemical Langevin equation are commonly used approximations of the chemical master equation. These equations are derived f…