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cs.LG2026

PRL-Bench: A Comprehensive Benchmark Evaluating LLMs' Capabilities in Frontier Physics Research

Tingjia Miao, Wenkai Jin, Muhua Zhang +19

The paradigm of agentic science requires AI systems to conduct robust reasoning and engage in long-horizon, autonomous exploration. However, current scientific benchmarks remain co…

cs.LG2026

From Human Labels to Literature: Semi-Supervised Learning of NMR Chemical Shifts at Scale

Yongqi Jin, Yecheng Wang, Jun-jie Wang +3

Accurate prediction of nuclear magnetic resonance (NMR) chemical shifts is fundamental to spectral analysis and molecular structure elucidation, yet existing machine learning metho…

cs.LG2025

Unified Cross-Scale 3D Generation and Understanding via Autoregressive Modeling

Shuqi Lu, Haowei Lin, Lin Yao +6

3D structure modeling is essential across scales, enabling applications from fluid simulation and 3D reconstruction to protein folding and molecular docking. Yet, despite shared 3D…

cs.LG2025

SynBridge: Bridging Reaction States via Discrete Flow for Bidirectional Reaction Prediction

Haitao Lin, Junjie Wang, Zhifeng Gao +5

The essence of a chemical reaction lies in the redistribution and reorganization of electrons, which is often manifested through electron transfer or the migration of electron pair…

cs.LG2025

pUniFind: a unified large pre-trained deep learning model pushing the limit of mass spectra interpretation

Jiale Zhao, Pengzhi Mao, Kaifei Wang +12

Deep learning has advanced mass spectrometry data interpretation, yet most models remain feature extractors rather than unified scoring frameworks. We present pUniFind, the first l…

cs.LG2025

Intelligent System for Automated Molecular Patent Infringement Assessment

Yaorui Shi, Sihang Li, Taiyan Zhang +12

Automated drug discovery offers significant potential for accelerating the development of novel therapeutics by substituting labor-intensive human workflows with machine-driven pro…