99 citations · 492 across the 22 of their papers we have counts for
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q-bio.BM2019★ 29 cited
Improving RNA secondary structure prediction via state inference with deep recurrent neural networks
Devin Willmott, David Murrugarra, Qiang Ye
The problem of determining which nucleotides of an RNA sequence are paired or unpaired in the secondary structure of an RNA, which we call RNA state inference, can be studied by di…
q-bio.MN2019★ 9 cited
Quantifying the Total Effect of Edge Interventions in Discrete Multistate Networks
David Murrugarra, Elena Dimitrova
Developing efficient computational methods to assess the impact of external interventions on the dynamics of a network model is an important problem in systems biology. This paper…