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math.CO2020
Combinatorial and computational investigations of Neighbor-Joining bias
Ruth Davidson, Abraham Martin del Campo
The Neighbor-Joining algorithm is a popular distance-based phylogenetic method that computes a tree metric from a dissimilarity map arising from biological data. Realizing dissimil…
math.CO2011★ 2 cited
Degree Bounds for a Minimal Markov Basis for the Three-State Toric Homogeneous Markov Chain Model
David Haws, Abraham Martin Del Campo, Ruriko Yoshida
We study the three state toric homogeneous Markov chain model and three special cases of it, namely: (i) when the initial state parameters are constant, (ii) without self-loops, an…