3 papers
q-bio.QM2026
Sparse regression, classification, and microbial network estimation in QIIME2 with q2-classo and q2-gglasso
Oleg Vlasovets, Fabian Schaipp, Leo Simpson +3
Motivation: Statistical analysis of microbial count data derived from 16S rRNA or metagenomics sequencing poses unique challenges due to the sparse, compositional, and high-dimensi…
q-bio.OT2024
Assessing microbiome engraftment extent following fecal microbiota transplant with q2-fmt
Chloe Herman, Evan Bolyen, Anthony Simard +2
We present q2-fmt, a QIIME 2 plugin that provides diverse methods for assessing the extent of microbiome engraftment following fecal microbiota transplant. The methods implemented…
q-bio.GN2024
Upcycling Human Excrement: The Gut Microbiome to Soil Microbiome Axis
Jeff Meilander, Chloe Herman, Andrew Manley +34
Human excrement composting (HEC) is a sustainable strategy for human excrement (HE) management that recycles nutrients and mitigates health risks while reducing reliance on freshwa…