2 papers
q-bio.QM2026
Mamba-SSM with LLM Reasoning for Feature Selection: Faithfulness-Aware Biomarker Discovery
Pushpa Kumar Balan, Aijing Feng
Gradient saliency from deep sequence models surfaces candidate biomarkers efficiently, but the resulting gene lists can be contaminated by tissue-composition confounders that degra…
q-bio.PE2024
SMDP: SARS-CoV-2 Mutation Distribution Profiler for rapid estimation of mutational histories of unusual lineages
Erin E. Gill, Sheri Harari, Aijing Feng +2
SARS-CoV-2 usually evolves at a relatively constant rate over time. Occasionally, however, lineages arise with higher-than-expected numbers of mutations given the date of sampling.…