3 papers
cs.AI2026
Large Language Models Meet Biomedical Knowledge Graphs for Mechanistically Grounded Therapeutic Prioritization
Chih-Hsuan Wei, Chi-Ping Day, Zhizheng Wang +8
Drug repurposing is often framed as a candidate identification task, but existing approaches provide limited guidance for distinguishing biologically plausible candidates from hist…
cs.AI2026
DeepER-Med: Advancing Deep Evidence-Based Research in Medicine Through Agentic AI
Zhizheng Wang, Chih-Hsuan Wei, Joey Chan +19
Trustworthiness and transparency are essential for the clinical adoption of artificial intelligence (AI) in healthcare and biomedical research. Recent deep research systems aim to…
q-bio.GN2025
Knowledge-guided Contextual Gene Set Analysis Using Large Language Models
Zhizheng Wang, Chi-Ping Day, Chih-Hsuan Wei +9
Gene set analysis (GSA) is a foundational approach for interpreting genomic data of diseases by linking genes to biological processes. However, conventional GSA methods overlook cl…